1. cd /mnt/isilon/projects/ecosystem_biology/ONT_pilot/external_data
2.  
3. # aquifer
4. # rm extracted LR data (archive stays)
5. rm -rf aquifer/lr/2019012*_02um
6. # rm not used SR data (only ERR3654041 is needed) [see issue 62]
7. rm -r aquifer/sr/ERR3654040/
8. # protect
9. chmod -R a-w aquifer/
10.  
11. # eli
12. # protect
13. rm -r eli/
14.  
15. # ganes
16. # Q: do we need ganges ???
17. # rm all data
18. rm -r ganges/
19.  
20. # mock (aka zymo)
21. # rm LR data for "LOG"
22. rm mock/lr/Zymo-GridION-LOG-BB-SN_signal.tar.gz
23. # rm not used SR data (only ERR2984773 is needed) [???]
24. rm -r mock/sr/ERR2935805/
25. # rename folder
26. mv mock zymo
27. # protect
28. chmod -R a-w zymo/
29.  
30. # nwc
31. # protect
32. chmod -R a-w nwc/
33.  
34. # rumen
35. # protect
36. chmod -R a-w rumen/
37.  
38. # all the other stuff:
39. #   -> not needed as there is code to download the data
40. # rm
41. find . -maxdepth 1 -mindepth 1 | grep -v "aquifer\|eli\|mock\|nwc\|rumen\|zymo" | while read f
42. do
43.     rm -ri "${f}"
44. done
45.  
46. # set the s-bit for all directories
47. cd /mnt/isilon/projects/ecosystem_biology/ONT_pilot/
48. find external_data/ -type d -exec chmod g+s {} \;